PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC044554.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 434aa    MW: 45408.9 Da    PI: 8.1689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC044554.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-12232277555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  EcC044554.10 232 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 277
                   99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.93E-13225281No hitNo description
SuperFamilySSF474595.1E-17225287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16229286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9232277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
SLLFLCLSLS SSSSSSFSFF QHAALQQRDA DPQLPXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA  120
AAAKAMLLQQ MLMAGGDGSP SSSHFKSANL GGDSSVQALF NGFAGSLHGN GQTSNHSQHF  180
SLPQGGSMQA SPNFSAQAAA ASGSGGTAGT AAAPGQPRQR VRARRGQATD PHSIAERLRR  240
ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD  300
MSSEGGGGGD GSQANGSGRS SSNGGASGDS LTVSEHQVAK LMEEDMGSAM QYLQGKGLCL  360
MPISLATAIS TATCQSRIPL PSPSAHHHHH HQGPGDGPTS PSVSALTVQS AALAGGAAGG  420
GGVDAKDAAS ISKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048828.11e-165PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG93e-93BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A059CSL71e-164A0A059CSL7_EUCGR; Uncharacterized protein
STRINGVIT_11s0037g00040.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-61LJRHL1-like 1